If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ), 'gf_id' => 'HOM05D000713', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000713' ), 'data_identifier' => 'HOM05D000713', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000713', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '75' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia10025' => 'ach', 'Actinidia10028' => 'ach', 'Actinidia10029' => 'ach', 'Actinidia10030' => 'ach', 'Actinidia10031' => 'ach', 'Actinidia10032' => 'ach', 'Actinidia12708' => 'ach', 'Actinidia20920' => 'ach', 'Actinidia24120' => 'ach', 'Actinidia33424' => 'ach', 'Actinidia33425' => 'ach', 'Actinidia33426' => 'ach', 'Ah.05g180770' => 'amhyb', 'Aqoxy2G00964' => 'aox', 'Aqoxy2G00994' => 'aox', 'Aqoxy2G00999' => 'aox', 'Aqoxy2G01000' => 'aox', 'Aqoxy2G01001' => 'aox', 'Aqoxy2G01006' => 'aox', 'Aqoxy2G01008' => 'aox', 'Aqoxy5G02251' => 'aox', 'Aqoxy5G02253' => 'aox', 'Aqoxy5G02255' => 'aox', 'Aqoxy5G02256' => 'aox', 'Aqoxy5G03065' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4DPV3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NFM4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEFA3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHJ4T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJVW7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ0Y7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKH742' => 'arhy', 'ATR0051G054' => 'atr', 'ATR0568G017' => 'atr', 'ATR0665G002' => 'atr', 'ATR0665G058' => 'atr', 'ATR0665G360' => 'atr', 'ATR0686G016' => 'atr', 'ATR0686G044' => 'atr', 'ATR0686G096' => 'atr', 'ATR0686G125' => 'atr', 'ATR0686G232' => 'atr', 'AUR62001156' => 'cqu', 'AUR62004337' => 'cqu', 'AUR62004339' => 'cqu', 'AUR62016520' => 'cqu', 'AUR62022543' => 'cqu', 'AUR62022545' => 'cqu', 'AUR62042899' => 'cqu', 'AUR62042901' => 'cqu', 'AUR62043400' => 'cqu', 'AUR62043656' => 'cqu', 'AUR62043699' => 'cqu', 'CAN.G631.48' => 'can', 'CAN.G631.49' => 'can', 'CAN.G631.50' => 'can', 'CAN.G631.51' => 'can', 'CAN.G774.12' => 'can', 'CAN.G774.13' => 'can', 'CAN.G78.36' => 'can', 'CAN.G78.37' => 'can', 'CAN.G78.38' => 'can', 'CAN.G78.39' => 'can', 'CANSAT11G0631' => 'cansat', 'CANSAT35G1183' => 'cansat', 'CANSAT56G2219' => 'cansat', 'CANSAT56G2261' => 'cansat', 'CANSAT56G2546' => 'cansat', 'CANSAT56G2734' => 'cansat', 'CANSAT56G2912' => 'cansat', 'CANSAT56G2979' => 'cansat', 'CANSAT78G1336' => 'cansat', 'Ca_01394_v3' => 'car', 'Ca_07903_v3' => 'car', 'Ca_07904_v3' => 'car', 'Ca_07905_v3' => 'car', 'Ca_14848_v3' => 'car', 'Ca_14857_v3' => 'car', 'Ca_23649_v3' => 'car', 'Ca_29498_v3' => 'car', 'Cc02_g37810' => 'ccan', 'Cc08_g08550' => 'ccan', 'Cc08_g14630' => 'ccan', 'Cfa003942' => 'cfa', 'Cfa003943' => 'cfa', 'Cfa003944' => 'cfa', 'Cfa003945' => 'cfa', 'Cfa011289' => 'cfa', 'Cfa011290' => 'cfa', 'Ciclev10003380m.g' => 'ccl', 'Ciclev10022646m.g' => 'ccl', 'Ciclev10023281m.g' => 'ccl', 'Ciclev10023417m.g' => 'ccl', 'Ciclev10023491m.g' => 'ccl', 'Ciclev10029991m.g' => 'ccl', 'Ciclev10030227m.g' => 'ccl', 'CiPaw.01G059200' => 'cil', 'CiPaw.01G059300' => 'cil', 'CiPaw.02G029600' => 'cil', 'CiPaw.13G111600' => 'cil', 'CiPaw.14G079300' => 'cil', 'CiPaw.14G085500' => 'cil', 'ClCG02G021290' => 'cla', 'ClCG02G021300' => 'cla', 'COL.COLO4_07127' => 'col', 'COL.COLO4_07548' => 'col', 'COL.COLO4_08122' => 'col', 'COL.COLO4_12691' => 'col', 'COL.COLO4_12692' => 'col', 'COL.COLO4_17581' => 'col', 'COL.COLO4_17582' => 'col', 'COL.COLO4_18295' => 'col', 'COL.COLO4_18296' => 'col', 'COL.COLO4_18297' => 'col', 'COL.COLO4_18298' => 'col', 'COL.COLO4_38464' => 'col', 'Cpa.g.sc54.6' => 'cpa', 'Cpa.g.sc65.10' => 'cpa', 'CsaV3_6G014070' => 'csa', 'CsaV3_6G014080' => 'csa', 'CsaV3_6G014090' => 'csa', 'CsaV3_6G014100' => 'csa', 'CsaV3_7G011290' => 'csa', 'CsaV3_7G012650' => 'csa', 'CSS0003123' => 'camsi', 'CSS0003333' => 'camsi', 'CSS0003557' => 'camsi', 'CSS0005061' => 'camsi', 'CSS0005913' => 'camsi', 'CSS0012501' => 'camsi', 'CSS0024188' => 'camsi', 'CSS0026384' => 'camsi', 'CSS0032075' => 'camsi', 'CSS0032597' => 'camsi', 'CSS0034268' => 'camsi', 'CSS0041435' => 'camsi', 'CSS0041754' => 'camsi', 'CSS0041955' => 'camsi', 'CSS0047369' => 'camsi', 'CSS0047373' => 'camsi', 'CSS0050105' => 'camsi', 'DCAR_000607' => 'dca', 'DCAR_000897' => 'dca', 'DCAR_000898' => 'dca', 'DCAR_004640' => 'dca', 'DCAR_006074' => 'dca', 'DCAR_006296' => 'dca', 'DCAR_006921' => 'dca', 'DCAR_006922' => 'dca', 'DCAR_008604' => 'dca', 'DCAR_009581' => 'dca', 'DCAR_012198' => 'dca', 'DCAR_012199' => 'dca', 'DCAR_012200' => 'dca', 'DCAR_012201' => 'dca', 'DCAR_014483' => 'dca', 'DCAR_025180' => 'dca', 'DCAR_025184' => 'dca', 'Dinv05696' => 'din', 'Dinv05697' => 'din', 'Dinv05698' => 'din', 'Dinv32464' => 'din', 'Dinv32705' => 'din', 'Dinv32707' => 'din', 'Dinv32709' => 'din', 'Dinv43793' => 'din', 'Dinv43796' => 'din', 'Dinv43798' => 'din', 'Dinv43799' => 'din', 'Dinv43800' => 'din', 'Dinv43801' => 'din', 'Duzib133G0935' => 'dzi', 'Duzib138G0319' => 'dzi', 'Duzib138G0526' => 'dzi', 'Duzib138G0659' => 'dzi', 'Duzib138G0765' => 'dzi', 'Duzib168G0827' => 'dzi', 'Duzib213G1020' => 'dzi', 'ECA234G1245' => 'eca', 'ECA234G1662' => 'eca', 'ECA234G1694' => 'eca', 'ECA234G3629' => 'eca', 'ECA234G4121' => 'eca', 'ECA234G4699' => 'eca', 'ECA240G1895' => 'eca', 'ECA240G3818' => 'eca', 'ECA240G4696' => 'eca', 'ECA248G1269' => 'eca', 'EL10Ac1g00435' => 'bvu', 'EL10Ac1g00549' => 'bvu', 'Eucgr.B02523' => 'egr', 'Eucgr.B02524' => 'egr', 'Eucgr.B02525' => 'egr', 'Eucgr.B02526' => 'egr', 'Eucgr.D01854' => 'egr', 'Eucgr.D01855' => 'egr', 'Eucgr.D02279' => 'egr', 'Eucgr.E00160' => 'egr', 'Eucgr.E00161' => 'egr', 'Eucgr.E00294' => 'egr', 'Eucgr.G00736' => 'egr', 'Eucgr.G00742' => 'egr', 'Eucgr.G00743' => 'egr', 'Eucgr.I00364' => 'egr', 'Eucgr.I01673' => 'egr', 'Eucgr.J02753' => 'egr', 'Eucgr.K00024' => 'egr', 'Eucgr.L01996' => 'egr', 'FAN01G0574' => 'fan', 'FAN01G0583' => 'fan', 'FAN01G0786' => 'fan', 'FAN01G0926' => 'fan', 'FAN01G1117' => 'fan', 'FAN01G1279' => 'fan', 'FAN01G1486' => 'fan', 'FAN01G2959' => 'fan', 'FAN03G0035' => 'fan', 'FAN03G0449' => 'fan', 'FAN03G0812' => 'fan', 'FAN03G1011' => 'fan', 'FAN03G1110' => 'fan', 'FAN03G1355' => 'fan', 'FAN03G1491' => 'fan', 'FAN03G1626' => 'fan', 'FAN03G2002' => 'fan', 'FAN03G2072' => 'fan', 'FAN03G2777' => 'fan', 'FAN03G2778' => 'fan', 'FAN03G3187' => 'fan', 'FAN06G0721' => 'fan', 'FAN06G1504' => 'fan', 'FAN06G1661' => 'fan', 'FAN06G1756' => 'fan', 'FAN06G2713' => 'fan', 'FAN06G3274' => 'fan', 'FAN06G3450' => 'fan', 'FAN06G4141' => 'fan', 'FAN06G4634' => 'fan', 'FAN06G5110' => 'fan', 'FAN10G0754' => 'fan', 'FAN10G1541' => 'fan', 'FAN10G1861' => 'fan', 'FAN10G1915' => 'fan', 'FAN10G2454' => 'fan', 'FAN10G2703' => 'fan', 'FAN10G3099' => 'fan', 'FAN10G3334' => 'fan', 'FAN10G3510' => 'fan', 'FAN10G3546' => 'fan', 'FAN10G3585' => 'fan', 'FAN11G0201' => 'fan', 'FAN12G0064' => 'fan', 'FAN16G0206' => 'fan', 'FAN17G2330' => 'fan', 'FvH4_3g31600' => 'fve', 'FvH4_3g31620' => 'fve', 'FvH4_4g25200' => 'fve', 'FvH4_5g30141' => 'fve', 'FvH4_7g06580' => 'fve', 'FvH4_7g13910' => 'fve', 'FvH4_7g13920' => 'fve', 'FvH4_7g13921' => 'fve', 'FvH4_7g13930' => 'fve', 'FvH4_7g13931' => 'fve', 'FvH4_7g13940' => 'fve', 'FvH4_7g13941' => 'fve', 'FvH4_7g13950' => 'fve', 'FvH4_7g13961' => 'fve', 'FvH4_7g13963' => 'fve', 'FvH4_7g13964' => 'fve', 'FvH4_7g13965' => 'fve', 'FvH4_7g16741' => 'fve', 'FvH4_7g19470' => 'fve', 'Glyma.03G010100' => 'gma', 'Glyma.03G010300' => 'gma', 'Glyma.03G010500' => 'gma', 'Glyma.03G010600' => 'gma', 'Glyma.03G011600' => 'gma', 'Glyma.03G012400' => 'gma', 'Glyma.09G260700' => 'gma', 'Glyma.09G260800' => 'gma', 'Glyma.10G190800' => 'gma', 'Glyma.10G190900' => 'gma', 'Glyma.13G324100' => 'gma', 'Glyma.18G231100' => 'gma', 'Glyma.20G199450' => 'gma', 'Gohir.1Z016200' => 'ghi', 'Gohir.1Z016300' => 'ghi', 'Gohir.1Z049359' => 'ghi', 'Gohir.1Z049364' => 'ghi', 'Gohir.1Z049418' => 'ghi', 'Gohir.1Z049459' => 'ghi', 'Gohir.1Z049464' => 'ghi', 'Gohir.1Z049520' => 'ghi', 'Gohir.A05G302700' => 'ghi', 'Gohir.A05G302750' => 'ghi', 'Gohir.A05G302950' => 'ghi', 'Gohir.A05G303000' => 'ghi', 'Gohir.A05G303033' => 'ghi', 'Gohir.A05G303066' => 'ghi', 'Gohir.A11G087800' => 'ghi', 'Gohir.A12G105700' => 'ghi', 'Gohir.A12G105900' => 'ghi', 'Gohir.A12G106032' => 'ghi', 'Gohir.A12G109700' => 'ghi', 'Gohir.A13G231200' => 'ghi', 'Gohir.A13G231600' => 'ghi', 'Gohir.D05G105400' => 'ghi', 'Gohir.D05G302100' => 'ghi', 'Gohir.D05G302125' => 'ghi', 'Gohir.D05G302150' => 'ghi', 'Gohir.D05G302175' => 'ghi', 'Gohir.D05G302201' => 'ghi', 'Gohir.D05G302226' => 'ghi', 'Gohir.D05G302251' => 'ghi', 'Gohir.D11G092133' => 'ghi', 'Gohir.D11G092200' => 'ghi', 'Gohir.D12G109600' => 'ghi', 'Gohir.D12G109700' => 'ghi', 'Gohir.D12G109750' => 'ghi', 'Gohir.D12G109800' => 'ghi', 'Gohir.D12G109900' => 'ghi', 'Gohir.D12G112800' => 'ghi', 'Gohir.D12G112866' => 'ghi', 'Gorai.007G098300' => 'gra', 'Gorai.007G098500' => 'gra', 'Gorai.008G118700' => 'gra', 'Gorai.008G118800' => 'gra', 'Gorai.008G118900' => 'gra', 'Gorai.008G119000' => 'gra', 'Gorai.008G119100' => 'gra', 'Gorai.008G122200' => 'gra', 'Gorai.008G122400' => 'gra', 'Gorai.009G109400' => 'gra', 'Gorai.009G109500' => 'gra', 'Gorai.009G320200' => 'gra', 'Gorai.009G320300' => 'gra', 'Gorai.009G320400' => 'gra', 'Gorai.009G320500' => 'gra', 'Gorai.009G320600' => 'gra', 'Gorai.009G320700' => 'gra', 'Gorai.009G370600' => 'gra', 'Gorai.009G371000' => 'gra', 'Gorai.N011300' => 'gra', 'GSVIVG01017327001' => 'vvi', 'GSVIVG01017329001' => 'vvi', 'GSVIVG01025221001' => 'vvi', 'GSVIVG01025223001' => 'vvi', 'GSVIVG01025225001' => 'vvi', 'GSVIVG01026883001' => 'vvi', 'GSVIVG01026884001' => 'vvi', 'GSVIVG01026885001' => 'vvi', 'GSVIVG01026886001' => 'vvi', 'GSVIVG01026887001' => 'vvi', 'HanXRQChr01g0020871' => 'han', 'HanXRQChr01g0020891' => 'han', 'HanXRQChr03g0083511' => 'han', 'HanXRQChr13g0426381' => 'han', 'HanXRQChr13g0426391' => 'han', 'HanXRQChr13g0426401' => 'han', 'HanXRQChr13g0426411' => 'han', 'HanXRQChr13g0426421' => 'han', 'HanXRQChr13g0426431' => 'han', 'HanXRQChr13g0426441' => 'han', 'HanXRQChr13g0426471' => 'han', 'HanXRQChr16g0521931' => 'han', 'HanXRQChr16g0521941' => 'han', 'HanXRQChr16g0521951' => 'han', 'HanXRQChr16g0521961' => 'han', 'HanXRQChr16g0521981' => 'han', 'HanXRQChr16g0522011' => 'han', 'HanXRQChr16g0522021' => 'han', 'HanXRQChr16g0522031' => 'han', 'HanXRQChr16g0522041' => 'han', 'Haze_06069' => 'cav', 'Haze_08598' => 'cav', 'Haze_15481' => 'cav', 'Haze_15482' => 'cav', 'Haze_20604' => 'cav', 'Haze_20606' => 'cav', 'Haze_23773' => 'cav', 'Hma1.2p1_0001F.1_g001320' => 'hma', 'Hma1.2p1_0033F.1_g020200' => 'hma', 'Hma1.2p1_0033F.1_g020210' => 'hma', 'Hma1.2p1_0033F.1_g020220' => 'hma', 'Hma1.2p1_0033F.1_g020240' => 'hma', 'Hma1.2p1_0033F.1_g020270' => 'hma', 'Hma1.2p1_0033F.1_g020280' => 'hma', 'Hma1.2p1_0033F.1_g020300' => 'hma', 'Hma1.2p1_0297F.1_g117110' => 'hma', 'Hma1.2p1_0297F.1_g117120' => 'hma', 'Hma1.2p1_0297F.1_g117135' => 'hma', 'Hma1.2p1_0871F.1_g230990' => 'hma', 'Hma1.2p1_0896F.1_g233930' => 'hma', 'HPP92_022115' => 'vpl', 'HPP92_022118' => 'vpl', 'Lj1g0008494' => 'lja', 'Lj2g0003415' => 'lja', 'Lj2P1019T20' => 'lonja', 'Lj2P1019T25' => 'lonja', 'Lj3g0001483' => 'lja', 'Lj3g0012760' => 'lja', 'Lj3g0016471' => 'lja', 'Lj3g0019946' => 'lja', 'Lj3g0025609' => 'lja', 'Lj5g0020136' => 'lja', 'Lj7C515T11' => 'lonja', 'Lj7C515T12' => 'lonja', 'Lj7C515T13' => 'lonja', 'Lj7P515T27' => 'lonja', 'Lj7P515T33' => 'lonja', 'Lj9A582T83' => 'lonja', 'Lj9C582T4' => 'lonja', 'Lj9C582T5' => 'lonja', 'Lj9C582T7' => 'lonja', 'Lsat_1_v5_gn_1_100700' => 'lsa', 'Lsat_1_v5_gn_1_97281' => 'lsa', 'Lsat_1_v5_gn_3_136321' => 'lsa', 'Lsat_1_v5_gn_3_136461' => 'lsa', 'Lsat_1_v5_gn_3_136860' => 'lsa', 'Lsat_1_v5_gn_3_136880' => 'lsa', 'Lsat_1_v5_gn_4_40280' => 'lsa', 'Lsat_1_v5_gn_4_40580' => 'lsa', 'Lsat_1_v5_gn_4_40660' => 'lsa', 'Lsat_1_v5_gn_4_40680' => 'lsa', 'Lsat_1_v5_gn_4_40720' => 'lsa', 'Lsat_1_v5_gn_4_55621' => 'lsa', 'Lsat_1_v5_gn_4_56120' => 'lsa', 'Lsat_1_v5_gn_5_13141' => 'lsa', 'Lsat_1_v5_gn_5_13181' => 'lsa', 'Manes.01G062100' => 'mes', 'Manes.01G062200' => 'mes', 'Manes.01G062300' => 'mes', 'Manes.01G258300' => 'mes', 'Manes.01G258900' => 'mes', 'Manes.01G258904' => 'mes', 'Manes.05G035500' => 'mes', 'Manes.05G035600' => 'mes', 'Manes.05G035800' => 'mes', 'Manes.05G035900' => 'mes', 'Manes.11G148100' => 'mes', 'Manes.11G148300' => 'mes', 'Manes.11G148401' => 'mes', 'MBI04_g30808_MAGBIO' => 'mbi', 'MBI17_g35868_MAGBIO' => 'mbi', 'MBI18_g04691_MAGBIO' => 'mbi', 'MBI18_g04692_MAGBIO' => 'mbi', 'MBI18_g14088_MAGBIO' => 'mbi', 'MBI18_g14089_MAGBIO' => 'mbi', 'MBI18_g37946_MAGBIO' => 'mbi', 'MBI19_g27939_MAGBIO' => 'mbi', 'MD01G1055500' => 'mdo', 'MD01G1055800' => 'mdo', 'MD01G1055900' => 'mdo', 'MD01G1056000' => 'mdo', 'MD01G1056100' => 'mdo', 'MD07G1111100' => 'mdo', 'MD07G1139700' => 'mdo', 'MD07G1139800' => 'mdo', 'MD11G1140700' => 'mdo', 'Medtr2g095060' => 'mtr', 'Medtr2g095080' => 'mtr', 'Medtr2g095130' => 'mtr', 'Medtr2g095170' => 'mtr', 'Medtr3g061050' => 'mtr', 'Medtr4g036290' => 'mtr', 'Medtr4g036300' => 'mtr', 'Medtr4g036410' => 'mtr', 'Medtr7g012340' => 'mtr', 'Medtr7g012350' => 'mtr', 'Medtr7g076770' => 'mtr', 'Medtr7g076920' => 'mtr', 'Medtr7g076930' => 'mtr', 'Medtr7g076960' => 'mtr', 'Medtr7g076970' => 'mtr', 'Medtr7g076990' => 'mtr', 'Medtr7g077000' => 'mtr', 'Medtr7g077010' => 'mtr', 'Medtr7g077040' => 'mtr', 'Medtr7g077050' => 'mtr', 'Medtr7g077090' => 'mtr', 'Medtr7g077110' => 'mtr', 'Medtr8g031120' => 'mtr', 'Medtr8g031150' => 'mtr', 'Medtr8g031160' => 'mtr', 'Medtr8g031170' => 'mtr', 'MELO3C024937.2' => 'cme', 'MELO3C026923.2' => 'cme', 'MELO3C026924.2' => 'cme', 'MELO3C026925.2' => 'cme', 'Migut.B01733' => 'egut', 'Migut.B01735' => 'egut', 'Migut.B01736' => 'egut', 'Migut.B01737' => 'egut', 'Migut.B01738' => 'egut', 'Migut.E01100' => 'egut', 'Migut.L00686' => 'egut', 'Migut.L00723' => 'egut', 'Nitab4.5_0000094g0190' => 'nta', 'Nitab4.5_0000580g0250' => 'nta', 'Nitab4.5_0000580g0270' => 'nta', 'Nitab4.5_0002160g0110' => 'nta', 'Nitab4.5_0002325g0080' => 'nta', 'Nitab4.5_0002461g0060' => 'nta', 'Nitab4.5_0003111g0020' => 'nta', 'Nitab4.5_0003441g0010' => 'nta', 'Nitab4.5_0003441g0040' => 'nta', 'Nitab4.5_0004403g0010' => 'nta', 'Nitab4.5_0004403g0020' => 'nta', 'Nitab4.5_0004479g0020' => 'nta', 'Nitab4.5_0010110g0040' => 'nta', 'Nitab4.5_0013004g0030' => 'nta', 'Nn2g13742' => 'nnu', 'Oeu004499.1' => 'oeu', 'Oeu004500.1' => 'oeu', 'Oeu004504.1' => 'oeu', 'Oeu004505.1' => 'oeu', 'Oeu004506.1' => 'oeu', 'Oeu004507.1' => 'oeu', 'Oeu004510.1' => 'oeu', 'Oeu004512.1' => 'oeu', 'Oeu004514.1' => 'oeu', 'Oeu004516.1' => 'oeu', 'Oeu036430.1' => 'oeu', 'Oeu036971.1' => 'oeu', 'Oeu039073.1' => 'oeu', 'Oeu053284.1' => 'oeu', 'Oeu056300.1' => 'oeu', 'Os02g0637000' => 'osa', 'Os04g0364800' => 'osa', 'Os06g0116933' => 'osa', 'Os10g0489301' => 'osa', 'Os10g0490100' => 'osa', 'Os10g0490400' => 'osa', 'Os10g0490666' => 'osa', 'Peaxi162Scf00056g00004' => 'pax', 'Peaxi162Scf00056g00021' => 'pax', 'Peaxi162Scf00056g00023' => 'pax', 'Peaxi162Scf00056g00031' => 'pax', 'Peaxi162Scf00056g00127' => 'pax', 'Peaxi162Scf00115g00125' => 'pax', 'Peaxi162Scf00115g00132' => 'pax', 'Peaxi162Scf00115g00135' => 'pax', 'Peaxi162Scf00119g00066' => 'pax', 'Peaxi162Scf00119g00625' => 'pax', 'Peaxi162Scf01131g00118' => 'pax', 'PGR019G0003' => 'pgr', 'PGR019G0006' => 'pgr', 'PGR042G0880' => 'pgr', 'PGR042G2444' => 'pgr', 'PGR042G3807' => 'pgr', 'PGR044G0084' => 'pgr', 'PGR044G2116' => 'pgr', 'PGR044G2441' => 'pgr', 'PGR102G1016' => 'pgr', 'PGR102G1514' => 'pgr', 'PGSC0003DMG400000030' => 'stu', 'PGSC0003DMG400000032' => 'stu', 'PGSC0003DMG400000033' => 'stu', 'PGSC0003DMG400000034' => 'stu', 'PGSC0003DMG400008096' => 'stu', 'PGSC0003DMG400008097' => 'stu', 'PGSC0003DMG400008098' => 'stu', 'PGSC0003DMG400008099' => 'stu', 'PGSC0003DMG400008100' => 'stu', 'PGSC0003DMG400008101' => 'stu', 'PGSC0003DMG400012343' => 'stu', 'PGSC0003DMG400021638' => 'stu', 'PGSC0003DMG400034667' => 'stu', 'PGSC0003DMG400036674' => 'stu', 'PGSC0003DMG400040783' => 'stu', 'PGSC0003DMG402000029' => 'stu', 'Phvul.008G066000' => 'pvu', 'Phvul.008G066100' => 'pvu', 'Phvul.008G069300' => 'pvu', 'Phvul.010G096564' => 'pvu', 'Phvul.010G096700' => 'pvu', 'Phvul.010G096800' => 'pvu', 'Phvul.011G115215' => 'pvu', 'Potri.001G105000' => 'ptr', 'Potri.002G158600' => 'ptr', 'Potri.002G158700' => 'ptr', 'Potri.003G126200' => 'ptr', 'Potri.003G126400' => 'ptr', 'Potri.009G009700' => 'ptr', 'Potri.014G081800' => 'ptr', 'Potri.014G081900' => 'ptr', 'Potri.014G082000' => 'ptr', 'Potri.014G082700' => 'ptr', 'Potri.017G153100' => 'ptr', 'Potri.019G100100' => 'ptr', 'Pp3c5_25540' => 'ppa', 'Prupe.2G033300' => 'ppe', 'Prupe.2G165600' => 'ppe', 'Prupe.2G165700' => 'ppe', 'Prupe.2G165800' => 'ppe', 'Prupe.2G165900' => 'ppe', 'Prupe.2G166000' => 'ppe', 'Prupe.2G166600' => 'ppe', 'Prupe.2G166700' => 'ppe', 'Prupe.2G166800' => 'ppe', 'Prupe.2G166900' => 'ppe', 'Prupe.6G105400' => 'ppe', 'Prupe.6G105500' => 'ppe', 'Prupe.6G105800' => 'ppe', 'Prupe.6G105900' => 'ppe', 'Prupe.6G106000' => 'ppe', 'Psat3g109640' => 'psa', 'Psat3g109680' => 'psa', 'Psat3g109720' => 'psa', 'Psat3g109760' => 'psa', 'Psat3g109800' => 'psa', 'Psat3g109840' => 'psa', 'Psat3g110480' => 'psa', 'Psat4g202480' => 'psa', 'Psat5g279600' => 'psa', 'PSO063G0762' => 'pso', 'PSO063G1959' => 'pso', 'PSO063G4022' => 'pso', 'PSO541G0782' => 'pso', 'PSO675G2216' => 'pso', 'PSO675G8342' => 'pso', 'PSO782G1774' => 'pso', 'QL01p022528' => 'qlo', 'QL01p022595' => 'qlo', 'QL08p049098' => 'qlo', 'QL08p049113' => 'qlo', 'QL08p049144' => 'qlo', 'RcHm_v2.0_Chr1g0333851' => 'rch', 'RcHm_v2.0_Chr1g0333861' => 'rch', 'RcHm_v2.0_Chr1g0334061' => 'rch', 'RcHm_v2.0_Chr1g0335111' => 'rch', 'RcHm_v2.0_Chr1g0335191' => 'rch', 'RcHm_v2.0_Chr1g0340801' => 'rch', 'RcHm_v2.0_Chr1g0340861' => 'rch', 'RcHm_v2.0_Chr1g0348301' => 'rch', 'RcHm_v2.0_Chr1g0348351' => 'rch', 'RcHm_v2.0_Chr1g0353521' => 'rch', 'RcHm_v2.0_Chr1g0353601' => 'rch', 'RcHm_v2.0_Chr1g0354461' => 'rch', 'RcHm_v2.0_Chr1g0354521' => 'rch', 'RcHm_v2.0_Chr1g0354561' => 'rch', 'RcHm_v2.0_Chr1g0354571' => 'rch', 'RcHm_v2.0_Chr1g0354621' => 'rch', 'RcHm_v2.0_Chr1g0358341' => 'rch', 'RcHm_v2.0_Chr5g0022271' => 'rch', 'RcHm_v2.0_Chr5g0058241' => 'rch', 'RcHm_v2.0_Chr5g0058291' => 'rch', 'RcHm_v2.0_Chr5g0058321' => 'rch', 'RcHm_v2.0_Chr7g0206531' => 'rch', 'RcHm_v2.0_Chr7g0221941' => 'rch', 'RcHm_v2.0_Chr7g0232861' => 'rch', 'RcHm_v2.0_Chr7g0232891' => 'rch', 'RcHm_v2.0_Chr7g0232941' => 'rch', 'RcHm_v2.0_Chr7g0232951' => 'rch', 'RcHm_v2.0_Chr7g0232981' => 'rch', 'RcHm_v2.0_Chr7g0233011' => 'rch', 'Rhsim13G0096500' => 'rsi', 'Rhsim13G0096600' => 'rsi', 'Rhsim13G0096700' => 'rsi', 'Rhsim13G0096800' => 'rsi', 'Rhsim13G0097600' => 'rsi', 'Sabra12G0077600' => 'sbr', 'SalBow3G0268' => 'sbo', 'SalBow3G0475' => 'sbo', 'SalBow3G0965' => 'sbo', 'SalBow3G1369' => 'sbo', 'SalBow3G1945' => 'sbo', 'SalBow3G2000' => 'sbo', 'SalBow3G2692' => 'sbo', 'SalBow3G2783' => 'sbo', 'SalBow3G3383' => 'sbo', 'SalBow3G3625' => 'sbo', 'SalBow3G4279' => 'sbo', 'SalBow3G4342' => 'sbo', 'Sc01g0003330' => 'sci', 'Sc01g0003340' => 'sci', 'Sc23g0003020' => 'sci', 'Sed0003523' => 'sed', 'Sed0009388' => 'sed', 'Sed0009398' => 'sed', 'Sed0026359' => 'sed', 'SEGI_02856' => 'sgi', 'SEGI_09881' => 'sgi', 'SEGI_12097' => 'sgi', 'SEGI_14955' => 'sgi', 'SEGI_19353' => 'sgi', 'SEGI_21461' => 'sgi', 'SMO119G0135' => 'smo', 'SMO119G0234' => 'smo', 'SMO132G0006' => 'smo', 'SMO143G0001' => 'smo', 'SMO143G0255' => 'smo', 'SMO146G0155' => 'smo', 'SMO146G0391' => 'smo', 'SMO147G0072' => 'smo', 'SMO163G0094' => 'smo', 'SMO200G0097' => 'smo', 'SMO200G0221' => 'smo', 'SMO200G0265' => 'smo', 'SMO361G0420' => 'smo', 'Solyc01g010400.1' => 'sly', 'Solyc01g094430.1' => 'sly', 'Solyc01g094440.1' => 'sly', 'Solyc01g094450.1' => 'sly', 'Solyc03g013300.1' => 'sly', 'Solyc05g042020.1' => 'sly', 'Solyc05g048780.1' => 'sly', 'Solyc05g048790.1' => 'sly', 'Solyc08g080950.1' => 'sly', 'Solyc08g150140.1' => 'sly', 'Solyc11g069870.1' => 'sly', 'Solyc11g069880.1' => 'sly', 'Sopen00g011720' => 'spe', 'Sopen01g038210' => 'spe', 'Sopen01g038230' => 'spe', 'Sopen01g038240' => 'spe', 'Sopen01g038250' => 'spe', 'Sopen01g038260' => 'spe', 'Sopen04g020520' => 'spe', 'Sopen05g028100' => 'spe', 'Sopen05g028110' => 'spe', 'Sopen07g014630' => 'spe', 'Sopen08g023320' => 'spe', 'Sopen08g029260' => 'spe', 'Sopen11g028400' => 'spe', 'Sopen11g028410' => 'spe', 'TAR374G1549' => 'tar', 'TAR375G0277' => 'tar', 'TAR375G0638' => 'tar', 'TAR375G0895' => 'tar', 'TAR623G1790' => 'tar', 'TAR629G1717' => 'tar', 'TAR636G0901' => 'tar', 'TAR636G3376' => 'tar', 'TAR636G3463' => 'tar', 'Thecc.01G361100' => 'tca', 'Thecc.01G361200' => 'tca', 'Thecc.01G361300' => 'tca', 'Thecc.01G361400' => 'tca', 'Thecc.01G361500' => 'tca', 'Thecc.01G361700' => 'tca', 'Thecc.01G361800' => 'tca', 'Thecc.07G109500' => 'tca', 'Thecc.07G109600' => 'tca', 'Thecc.09G345000' => 'tca', 'Thecc.09G345100' => 'tca', 'TPR.G11502' => 'tpr', 'TPR.G11552' => 'tpr', 'TPR.G11616' => 'tpr', 'TPR.G14265' => 'tpr', 'TPR.G16837' => 'tpr', 'TPR.G16854' => 'tpr', 'TPR.G18995' => 'tpr', 'TPR.G23037' => 'tpr', 'TPR.G30298' => 'tpr', 'TPR.G32567' => 'tpr', 'TPR.G32577' => 'tpr', 'TPR.G32601' => 'tpr', 'TPR.G35323' => 'tpr', 'TPR.G39448' => 'tpr', 'TPR.G5194' => 'tpr', 'TPR.G8524' => 'tpr', 'TPR.G8546' => 'tpr', 'TWI14G0019' => 'twi', 'TWI14G0114' => 'twi', 'TWI14G0391' => 'twi', 'TWI14G1360' => 'twi', 'TWI14G1366' => 'twi', 'TWI23G0780' => 'twi', 'TWI23G0947' => 'twi', 'TWI31G0845' => 'twi', 'TWI59G0858' => 'twi', 'TWI59G0922' => 'twi', 'TWI59G1322' => 'twi', 'unitig_22.g6657' => 'ugi', 'vmacro03216' => 'vma', 'vmacro03218' => 'vma', 'vmacro03219' => 'vma', 'vmacro20945' => 'vma', 'VMungo0331G1500' => 'vmu', 'VMungo0720G1270' => 'vmu', 'VMungo0720G2574' => 'vmu', 'VMungo0720G2694' => 'vmu', 'VMungo1383G2971' => 'vmu', 'Zm00001eb044990' => 'zma', 'Zm00001eb045010' => 'zma', 'Zm00001eb045020' => 'zma', 'Zm00001eb045030' => 'zma', 'Zm00001eb045040' => 'zma', 'Zm00001eb045050' => 'zma', 'Zm00001eb045060' => 'zma', 'Zm00001eb045070' => 'zma', 'Zm00001eb045080' => 'zma', 'Zm00001eb045090' => 'zma', 'Zm00001eb045100' => 'zma', 'Zm00001eb045110' => 'zma', 'Zm00001eb045120' => 'zma', 'Zm00001eb045130' => 'zma', 'Zm00001eb045140' => 'zma', 'Zm00001eb045150' => 'zma', 'Zm00001eb045160' => 'zma', 'Zm00001eb045170' => 'zma', 'Zm00001eb045180' => 'zma', 'Zm00001eb068310' => 'zma', 'Zm00001eb068320' => 'zma', 'Zm00001eb221000' => 'zma', 'Zm00001eb221030' => 'zma', 'Zm00001eb432310' => 'zma' ) $gf_id = 'HOM05D000713' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000713' ) $data_identifier = 'HOM05D000713' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 12, 'amhyb' => (int) 1, 'aox' => (int) 12, 'arhy' => (int) 7, 'atr' => (int) 10, 'cqu' => (int) 11, 'can' => (int) 10, 'cansat' => (int) 9, 'car' => (int) 8, 'ccan' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 12, 'cpa' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 17, 'dca' => (int) 17, 'din' => (int) 13, 'dzi' => (int) 7, 'eca' => (int) 10, 'bvu' => (int) 2, 'egr' => (int) 18, 'fan' => (int) 46, 'fve' => (int) 19, 'gma' => (int) 13, 'ghi' => (int) 38, 'gra' => (int) 20, 'vvi' => (int) 10, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 13, 'vpl' => (int) 2, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 15, 'mes' => (int) 13, 'mbi' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 26, 'cme' => (int) 4, 'egut' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 1, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 10, 'stu' => (int) 16, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 1, 'ppe' => (int) 15, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 29, 'rsi' => (int) 5, 'sbr' => (int) 1, 'sbo' => (int) 12, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 6, 'smo' => (int) 13, 'sly' => (int) 12, 'spe' => (int) 14, 'tar' => (int) 9, 'tca' => (int) 11, 'tpr' => (int) 17, 'twi' => (int) 11, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 24 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432310' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1